Math 150 – Fall 2010
Statistics for Clinical Trials
Jo Hardin
Homework Assi
Text: Regression Methods in Biostatistics, Vittinghoff, Glidden, Shiboski, and McCulloch
Text website: http://www.epibiostat.ucsf.edu/biostat/vgsm/
Supplement: Stat 2 Labs by Shonda Kuiper
Website: http://web.grinnell.edu/individuals/kuipers/stat2labs/
You: all the supplemental materials are on Sakai
|
|
Due Date |
Chapter |
Topic |
Problems: |
Handout / R code |
|
Lab #0 |
Thurs 9/2 |
|
|
R tutorial (see course website, nothing due) |
|
|
Lab #1 |
Tues 9/7 |
K2 |
t-test |
Activities 1 – 8, Rcode |
|
|
HW #1 |
Thurs 9/9 |
2, 3.1 |
|
2.1, 2.4, 3.2, K2.34 (pg 25, actually 96 species) |
|
|
Lab #2 |
Tues 9/14 |
|
vs. lin reg |
Activities (9) – (15) |
|
|
HW #2 |
Thurs 9/16 |
See handout |
Regression |
|
|
|
Lab #3 |
Tues 9/21 |
K6 |
Contingency tables |
Activities 32-35 (plus identifying variables) (See |
|
|
HW #3 |
No HW |
|
|
|
|
|
Lab #4 |
Tues 9/28 |
K7(1) |
Logistic regression |
Activities 1-4 (data and chapter 7 on |
|
|
HW #4 |
Thurs 9/30 |
|
Contingency tables |
See handout |
|
|
Lab #5 |
No lab |
|
|
|
|
|
HW #5 |
Thurs 10/7 |
6 |
Logistic regression |
|
|
|
HW #6 |
Tues 10/12 |
6 |
Logistic regression |
|
|
|
|
Thurs 10/14 |
|
Exam 1 |
|
|
|
|
Fall Break |
|
|
|
|
|
Lab #7 (labeled for consistency???) |
Thurs 10/21 |
K7(2) |
Multiple logistic regression |
Activities 1-4 in the second logistic regression pdf |
|
|
|
|
|
|
|
|
|
HW #7 (I have no idea which HW # to use…) |
Thurs 10/28 |
|
|
Book: 4.11, 6.4, 6.5 + one more |
|
|
|
Tues 11/2 |
|
Read the article: (nothing to turn in) |
J. Ioannidis, Why most published research findings are false. PLoS Medicine, 2. e124 2005. |
|
|
HW #8 |
Thurs 11/4 |
|
|
assignment / data (dmd.csv) |
|
|
Lab #9 |
Tues 11/9 |
K9 |
|
Activities (1) – (3)
(chapter 9 on |
|
|
HW #9 |
Thurs 11/11 |
|
|
assignment (see ROC handout) |
|
|
|
|
|
|
|
|
|
Complete draft |
Thurs 11/18 |
|
|
Complete draft of research paper due |
|
|
HW #10 |
Tues 11/23 |
|
|
assignment (mostly from chapter 9 of Stat2Labs) / data (firstdrink.csv) |
Kaplan-Meier curves & Logrank Test Rcode |
|
|
Thurs Thanksgiving |
|
|
|
|
|
|
Tues 11/30 |
|
|
|
|
|
|
Thurs 12/2 |
|
|
Final research paper due |
|
|
HW # 11 |
Tues 12/7 |
|
|
assignment / data (BreastCancer.csv) |
|
|
|
|
|
|
|
|
|
|
Thurs 12/16 |
|
|
Take home final due (9am?) liver cirrhosis data |
|
|
|
|
|
|
|
|
Research paper assignment
Thurs 11/4: topic & background
Thurs 11/18: completed draft w/statistical analyses
Thurs 12/2: final version